A study on social contact rates relevant for the spread of infectious diseases in a Brazilian slum
DOI:
https://doi.org/10.20947/S0102-3098a0241Keywords:
Epidemiological survey, POLYMOD, Social contact rate, CliquesAbstract
Inspired by the POLYMOD study, an epidemiological survey was conducted in June 2021 in one of the most densely populated and socially vulnerable sectors of Belo Horizonte (Brazil). A sample of 1000 individuals allowed us to identify, within a 24-hour period, the rates of social contacts by age groups, the size and frequency of clique in which respondents participated, as well as other associated sociodemographic factors (number of household residents, location of contact, use of public transportation, among others). Data were analyzed in two phases. In the first one, results between two SIR models that simulated an eight-day pandemic process were compared. One included parameters adjusted from observed contact rates, the other operated with parameters adjusted from projected rates for Brazil. In the second phase, by means of a log-lin regression, we modeled the main social determinants of contact rates, using clique density as a proxy variable. The data analysis showed that family size, age, and social circles are the main covariates influencing the formation of cliques. It also demonstrated that compartmentalized epidemiological models, combined with social contact rates, have a better capacity to describe the epidemiological dynamics, providing a better basis for mitigation and control measures for diseases that cause acute respiratory syndromes.
Downloads
References
BARMPARIS, G. D.; TSIRONIS, G. P. Estimating the infection horizon of COVID-19 in eight countries with a data-driven approach. Chaos, Solitons & Fractals, v. 135, p. 109842, 2020.
BURT, R. S. Cohesion versus structural equivalence as a basis for network subgroups. Sociological Methods and Research, v. 7, n. 2, p. 189-212, 1978.
CHEN, H.; SHEN, Q. R. Variance estimation for survey-weighted data using bootstrap resampling methods: 2013 methods-of-payment survey questionnaire. Advances in Econometrics, v. 39, p. 87-106, 2019.
CHIN, T. et al. Contact surveys reveal heterogeneities in age-group contributions to SARS-CoV-2 dynamics in the United States. medRxiv, 2021.
COLOMBO, R. M.; GARAVELLO, M. Optimizing vaccination strategies in an age structured SIR model. Mathematical Biosciences and Engineering, v. 17, n. 2, p. 1074-1089, 2020.
GIVISIEZ, G. H. N.; OLIVEIRA, E. L. de. Demanda futura por moradias: demografia, habitação e mercado. Niterói/RJ: Universidade Federal Fluminense/PROPPi, 2018.
GJOKA, M.; SMITH, E.; BUTTS, C. Estimating clique composition and size distributions from sampled network data. In: IEEE CONFERENCE ON COMPUTER COMMUNICATIONS WORKSHOPS (INFOCOM WKSHPS). Proceedings […]. Toronto: IEEE, 2014.
GRIJALVA, C. G. et al. A household-based study of contact networks relevant for the spread of infectious diseases in the highlands of Peru. PLOS ONE, v. 10, n. 3, e0118457, 2015.
GUJARATI, D. N.; PORTER, D. C. Econometria básica. 5 ed. Porto Alegre: AMGH, 2012.
HAMILTON, M. A.; KNIGHT, J.; MISHRA, S. Failure to balance social contact matrices can bias models of infectious disease transmission. medRxiv, 2022.
HOANG, T. et al. A systematic review of social contact surveys to inform transmission models of close-contact infections. Epidemiology, v. 30, n. 5, p. 723-736, 2019.
HUNTER, D. R.; HANDCOCK, M. S.; BUTTS, C. T.; GOODREAU, S. M.; MORRIS, M. ergm: a package to fit, simulate and diagnose exponential-family models for networks. Journal of Statistical Software, v. 24, n. 3, p. 1-29, 2008. DOI: 10.18637/jss.v024.i03.
JENNESS, S. M.; GOODREAU, S. M.; MORRIS, M. EpiModel: an R package for mathematical modeling of infectious disease over networks. Journal of Statistical Software, v. 84, n. 8, 2018.
JOHNSTONE-ROBERTSON, S. P.; MARK, D.; MORROW, C.; MIDDELKOOP, K.; CHISWELL, M.; AQUINO, L. D.; BEKKER, L. G.; WOOD, R. Social mixing patterns within a South African township community: implications for respiratory disease transmission and control. American Journal of Epidemiology, v. 174, n. 11, p. 1246-1255, 2011. DOI: 10.1093/aje/kwr251.
KEELING, M.; ROHANI, P.; POURBOHLOUL, B. Modeling infectious diseases in humans and animals: modeling infectious diseases in humans and animals. Clinical Infectious Diseases, v. 47, n. 6, p. 864-865, 2008.
KLEPAC, P. et al. Contacts in context: large-scale setting-specific social mixing matrices from the BBC Pandemic project. medRxiv, 2020.
LIU, Y. et al. What are the underlying transmission patterns of COVID-19 outbreak? An age-specific social contact characterization. eClinicalMedicine, v. 22, 100354, 2020.
MOSSONG, J. et al. Social contacts and mixing patterns relevant to the spread of infectious diseases. Medic PLoS, v. 5, n. 3, e74, 2008.
OLIVEIRA, G. L. A.; LIMA, L.; SILVA, I.; RIBEIRO-DANTAS, M. C.; MONTEIRO, K. H.; ENDO, P. T. Evaluating social distancing measures and their association with the Covid-19 pandemic in South America. International Journal of Geo-Information, v. 10, n. 3, 121, 2021. https:// doi.org/10.3390/ijgi10030121.
OSORIO, R. G. A desigualdade racial da pobreza no Brasil. Rio de Janeiro: Ipea, 2019.
PREM, K.; COOK, A. R.; JIT, M. Projecting social contact matrices in 152 countries using contact surveys and demographic data. PLOS Computational Biology, v. 13, n. 9, e1005697, 2017.
RAM, V.; SCHAPOSNIK, L. P. A modified age-structured SIR model for COVID-19 type viruses. Scientific Reports, v. 11, n. 1, p. 1-15, 2021.
SILVEIRA, D. C. A implantação do Programa Vila Viva em áreas de Belo Horizonte: uma análise documental. 2015. 93 f. Dissertação (Mestrado em Saúde Coletiva com concentração em Ciências Humanas e Sociais em Saúde) - Programa de Pós-graduação em Saúde Coletiva, Centro de Pesquisas René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, 2015.
YANG, Y. et al. The deadly coronaviruses: the 2003 SARS pandemic and the 2020 novel coronavirus epidemic in China. Journal of Autoimmunity, v. 109, 102434, 2020.
YAVEROGLU, O. N. et al. Ergm.graphlets: a package for ERG modeling based on graphlet statistics. arXiv, 405.7348 [cs], 2014.
ZHOU, P. et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature, v. 579, n. 7798, p. 270-273, 2020.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2023 Revista Brasileira de Estudos de População
This work is licensed under a Creative Commons Attribution 4.0 International License.
Papers published in Rebep are original and protected under the Creative Commons attribution-type license (CC-BY). This license allows you to reuse publications in whole or in part for any purpose, free of charge, even for commercial purposes. Any person or institution can copy, distribute or reuse the content, as long as the author and the original source are properly mentioned.